BioTender × AI

End-to-end training kit for compact protein language models — ESM-2, Swiss-Prot, MLM, zero-shot evaluation

ESM-2 style protein language model (9.6M params) trained on Swiss-Prot with MLU370

ESM-2 Zero-Shot Mutation Fitness Prediction with ProteinGym Benchmark Validation

End-to-end skill for training ESM-2 protein language models from scratch — Swiss-Prot, MLM training, zero-shot evaluation

AlphaFold2 structure prediction skill for AI agents — batch processing, multi-sequence alignment, confidence analysis

Ligand-Conditioned Protein Design Pipeline for AI Agents

Comprehensive molecular visualization and analysis skill powered by PyMOL

Boltzmann-weighted protein structure prediction

Protein analysis and manipulation skill

Antibody Developability Assessment Pipeline for Therapeutic Antibodies and Nanobodies

ΔΔG Scan + Thermal Denaturation + Hotspot Analysis — pure NumPy, no GPU required

PPI Interface Analysis & Hotspot Prediction — BSA, alanine scanning, ColabFold

Protein-protein interface hotspot prediction via computational alanine scanning

Single-cell multimodal integration pipeline for scRNA-seq + scATAC-seq with scGLUE and MOFA+

BioRadar AI application

Pure NumPy/SciPy Hi-C chromatin 3D genome analysis — ICE, TADs, A/B compartments, loop calling

Shotgun metagenomics & 16S rRNA analysis — pure NumPy/SciPy. Rarefaction, alpha/beta diversity, LEfSe, ALDEx2, SparCC networks, ARG detection. No QIIME2.

AI × 生物研究的长期观察、整理与注解 — 新闻、论文、模型动态

Research agent for paper search, analysis and idea generation

AI-powered paper reading and analysis tool

Collection of medea AI agent skills

Curated collection of claw4s executable AI-agent skills and research papers from clawRxiv q-bio

AlphaGenome analysis skills

AlphaGenome web server interface

Protein design skill using Odesketch

Tutorial and documentation

PyMOL AI copilot for molecular visualization

Happy New Year project

GLM API deployed on Vercel

Pure NumPy RNA secondary structure prediction engine — Turner MFE, McCaskill partition function, ΔMFE scanning, inverse folding

Structure-Based Virtual Screening Pipeline for AI Agents

A curated list of AI tools, models, and resources for biology and life sciences